ADPF Digest
February 28, 2005


Table of Contents:

    New hardware:

  1. 12-in-1 Card Reader (Smart media, SD cards, etc.)

    Upgraded hardware:

  2. lw2 - public printer in Robinson 211

    New software:

  3. AUCTeX - TeX environment for the emacs editor
  4. Firefox - web browser from the makers of mozilla
  5. Gemini Observing Tool
  6. ISAP/LIA - ISO data analysis tools
  7. mpack - tools for processing e-mail attachments
  8. MX extensions for Python
  9. Sun Performance Library
  10. Thunderbird - e-mail client from the makers of mozilla
  11. TinyTim - HST PSF generator

    Upgraded software:

  12. APT
  13. cdrecord-prodvd
  14. CFITSIO
  15. CIAO
  16. fftw
  17. ghostscript
  18. GMS
  19. HP ADS
  20. IDL
  21. IDL Astronomy User's Library
  22. ImageMagick
  23. Maple
  24. Matlab
  25. PyDrizzle
  26. SpamAssassin
  27. SPOT
  28. supermongo

  1. 12-in-1 Card Reader (Smart media, SD cards, etc.)

    A SanDisk USB 2.0 12-in-1 Card Reader/Writer has been purchased for the ADPF. It is currently residing on Draco, but can be used on any Linux, Windows and Mac OS X computer in the department. This device allows us to read and write to the following types of media: Compact Flash I &II, SD, miniSD, MultiMediaCard, RS-MMC, Memory Stick, Memory Stick Duo, Memory Stick PRO, Memory Stick PRO Duo, SmartMedia and xD.

    More information can be found at:

    http://www.astro.caltech.edu/resources/cardreader.html



  2. lw2 - public printer in Robinson 211

    A HP Laserjet 4350 dtn printer has been installed as a replacement for lw2 in Robinson room 211. This new printer is a black and white, duplex laser printer and can print to letter and legal sized paper. The old lw2, an HP Laserjet 8150, has been moved to Robinson room 52 and now prints jobs sent to the "ps" queue.

    If you have a Macintosh or Windows computer that prints to either lw2 or ps, you will want to update your drivers. Drivers can be obtained at:

    http://www.astro.caltech.edu/resources/imap/prtdrv.html

    Printers in the ADPF are self-service. This means that users should change out the toner cartridges and install paper when necessary.




  3. AUCTeX - TeX environment for the emacs editor

    AUCTeX is an emacs package that supports writing and formatting TeX documents. For more information, please see:

    http://www.gnu.org/software/auctex/

    To activate this mode, add the following line to your ~/.emacs file:

    (require 'tex-site)



  4. Firefox - web browser from the makers of mozilla

    The firefox web browser has been installed. This program is based on the mozilla/netscape navigator and provides a faster, safer and more efficient web browser. It is a web browser only; If you need a mail client, please use the related "Thunderbird" software.

    For more details, see:

    http://www.mozilla.org/products/firefox/



  5. Gemini Observing Tool

    The "cherry" version of the Gemini Observing Tool (OT) has been installed. The Gemini Observing Tool is the software used for detailed definition and pre-planning of observations from approved proposals during the Phase II process. This version supports new programs for semester 2004B. The program is run under Linux and Solaris by typing:

    > OT

    On Mac OS, the program is a Mac OS application in /usr/local/Applications/.

    There is a built-in Help menu, and more details can be found on the web page:

    http://www.gemini.edu/sciops/OThelp/otIndex.html



  6. ISAP/LIA - ISO data analysis tools

    The ISAP (ISO Spectral Analysis Package) and LIA (LWS Interactive Analysis) packages have been installed. These packages are IDL routines for the analysis of ISO data from the SWS and LWS instruments. The software is run by typing:

    > isap

    For more information, see the web page at:

    http://www.ipac.caltech.edu/iso/isap/isap.html



  7. mpack - tools for processing e-mail attachments

    Mpack and munpack are utilities for encoding and decoding binary files in MIME format. For more details, see

    > man mpack
    > man munpack



  8. MX extensions for Python

    The MX Extensions for Python are a collection of high-quality Python software tools which enhance Python's usability in areas such as ODBC database connectivity, fast text processing, date/time processing and web site programming.

    For more info on the package, see the web site:

    http://www.egenix.com/files/python/eGenix-mx-Extensions.html



  9. Sun Performance Library

    The Sun Performance Library has been added to the Sun Developer 7.0 compiler set. This library contains enhanced versions of the LAPACK and BLAS routines, as well as FFT and other matrix functions, all optimized for performance on Sun processors. Anyone requiring fast math computation on the Suns should investigate this library.

    This library set itself can be found in:

    file://opt/SUNWspro/lib/libsunperf*

    A quick summary of the library can be found in:

    file://opt/SUNWspro/READMEs/performance_library

    along with pointers to more extensive documentation.




  10. Thunderbird - e-mail client from the makers of mozilla

    The Thunder e-mail client has been installed. This program is based on the mozilla/netscape communicator but provides a faster, safer and more productive e-mail experience.

    For more details, see:

    http://www.mozilla.org/products/thunderbird/



  11. TinyTim - HST PSF generator

    Tiny Tim is a software package for generating Hubble Space Telescope (HST) model point spread functions (PSFs). It is easy to use and relatively fast.

    For more details as well as example applications of PSF models and the FAQ list, check:

    http://www.stsci.edu/software/tinytim

    In order to run it, you will probably want something like this in your .cshrc (or other startup) file:

    setenv TINYTIM /usr/local/optical/tinytim

    The available programs are tiny1, tiny2, tiny3.




  12. APT

    The Astronomer's Proposal Tool (APT) from STScI has been upgraded to version 14.0. This useful tool contains two features:

    APT The Astronomer's Proposal Tool allows users to create and submit Phase I and II HST proposals. This tool must be used for Cycle 14 HST proposals.
    VTT The Visual Target Tuner allows users to view and manipulate HST instrument apertures against an image of the target.

    These programs are invoked as 'VTT' and 'APT'. The APT software also includes the latest version of StarView. StarView is a Java-based tool for browsing the HST archive. Users will find more and better features compared to accessing the archive via the HST web site. This program can be invoked as:

    > starview

    There is extensive on-line help using the question-mark icon. For more information, see the StarView web page:

    http://starview.stsci.edu/

    In Mac OS X, APT is a Macintosh (not X11) application, so these programs are run by double-clicking the application icon in /usr/local/Applications/.




  13. cdrecord-prodvd

    The 'cdrecord-prodvd' utility for burning DVDs has been upgraded on Linux and Solaris. Now both DVD-RW and DVD+RW formats are supported. DVD writers can currently be found on the public machines "kronos" and "draco". More help can be found in the cdrecord-prodvd file:

    ftp://ftp.berlios.de/pub/cdrecord/ProDVD/README

    and on our local web page:

    http://www.astro.caltech.edu/resources/cdrw-dvdrw.html

    DVD-R media can be purchased at Caltech Wired or in limited quantities from Robinson 10.




  14. CFITSIO

    The CFITSIO library for FITS file input/output has been upgraded to the latest version. This library is needed by a number of astronomy tools, but is easy enough to use in your own FORTRAN and C programs. The library provides for easy access of FITS data files, including the header and data segments. For documentation, see:

    file://usr/local/lib/cfitsio/fitsio.ps.gz
    file://usr/local/lib/cfitsio/cfitsio.ps.gz

    or the web page:

    http://heasarc.gsfc.nasa.gov/docs/software/fitsio/fitsio.html

    To use the library, you will need something like this in your compile command:

    -L/usr/local/lib -lcfitsio

    The CFITSIO.pm Perl module for accessing CFITSIO routines in Perl has also been upgraded to version 1.03. For a bit of information on this feature, see:

    http://hea-www.harvard.edu/~rpete/cfitsio/



  15. CIAO

    CIAO, the X-ray analysis package for Chandra data, has been upgraded to version 3.2.1. This release includes several new and updated instrument- specific tools, as well as a number of bug fixes. Complete release notes documenting the changes in this version can be found at:

    http://cxc.harvard.edu/ciao/releasenotes/

    To use the CIAO software, you will want something like this in your startup file (e.g. .cshrc):

    alias ciao source /usr/local/xray/ciao/bin/ciao.csh

    Then type 'ciao' to load the software. More information is available on the CIAO web site:

    http://cxc.harvard.edu/ciao/

    The X-ray calibration database for use with CIAO has also been upgraded, to version 3.0.1. This upgrade includes a number of changes outlined in:

    file://home/deimos/xray/CALDB/README_caldb3.0.1_upgrade.txt

    While most of the changes from version 2 to 3 are organizational, a few calibration files have changed, and a number of older, obsolete calibration files have been removed.

    For more information on CALDB, there is a web page:

    http://cxc.harvard.edu/caldb/



  16. fftw

    The FFTW Fast Fourier Transform library has been upgraded. This is a very fast FFT library for use in C and FORTRAN programs. For more information, see the web page:

    http://www.fftw.org/

    or the user manual:

    file://usr/local/lib/fftw/fftw_toc.html
    file://usr/local/lib/fftw/fftw.ps

    To use this library in a program, you will need to link to the library with something like this in your compile command:

    -L/usr/local/lib -lsfftw <-- single-precision
    -L/usr/local/lib -ldfftw <-- double-precision

    We have also installed the threaded version of this library, for optimization on parallel processor machines. To use the threaded (double-precision) library, add something like this to your compile command:

    -L/usr/local/lib -ldfftw_threads

    This is the final version 2.x release of the FFTW library. Those requiring version 3.x of the library (which is not entirely compatible with version 2.x) should contact help@astro.




  17. ghostscript

    The Ghostscript package has been upgraded to AFPL version 8.15. This includes the interpreter which underlies 'ghostview' and 'gv', as well as some utilities, such as 'ps2pdf' and 'ps2epsi'. There are manual pages as well as documentation at:

    file://usr/local/share/ghostscript/8.15/doc/Readme.htm



  18. GMS

    The Grants Management System (GMS) for electronically submitting HST grants has been upgraded. This is a minor update that improves some supplemental budget issues. It can be run as:

    > GMS

    on Linux and Solaris. On Mac OS X, just double click on:

    /usr/local/Applications/GMS



  19. HP ADS

    The HP Advanced Design System has been upgraded on the Solaris machines. HP ADS is a linear and nonlinear circuit simulator. In order to run it, you will probably want something like this in your .cshrc (or other startup) file:

    setenv PATH /usr/local/hpads/2004A/bin:${PATH}

    To start the software, run 'ads'.

    There is extensive local documentation at:

    file://usr/local/hpads/2004A/doc/manuals.htm

    Included there are release notes describing the changes in this latest version, such as support for remote simulations on RedHat Linux computers.




  20. IDL

    IDL has been upgraded to the latest version, v6.1.1. This powerful data analysis and visualization package has online help (type '?'), as well as a manual set available in the computer room (Robinson 52). Power users should come by Robinson 10 for their own paper copy of the "What's New in IDL 6.1" manual. This manual and others are also available in PDF form, including "Using IDL" and the "IDL Reference Guide":

    file://usr/local/rsi/idl/help/using.pdf
    file://usr/local/rsi/idl/help/refguide.pdf
    file://usr/local/rsi/idl/help/whatsnew.pdf

    There are additional useful manuals in that directory. Users might also consult the RSI web site:

    http://www.rsinc.com/

    Please note that all IDL processes older than 5 days will be automatically killed, in order to conserve our floating network licenses. Please contact help@astro if you have any questions concerning this policy.




  21. IDL Astronomy User's Library

    The most recent version of the IDL Astronomy User's Library has been installed in /usr/local/rsi/idl/external/astron/. For more information, please see the README and a description of the available procedures:

    file://usr/local/rsi/idl/external/astron/README
    file://usr/local/rsi/idl/external/astron/contents.txt

    The primary web site, with more detailed descriptions of the various IDL procedures, can be found at:

    http://idlastro.gsfc.nasa.gov/homepage.html

    To use the library, you may want to add something like this to your IDL .startup.pro file:

    ; add all subpaths of the IDL external directory, prepending
    !PATH = expand_path('+' + !DIR + ':' + 'external' + ':' + !PATH)
    ; setup non-standard system variables for astro library
    astrolib

    The following must be defined in your startup file (e.g. .cshrc) for the above to work:

    setenv IDL_STARTUP ~/.startup.pro



  22. ImageMagick

    A graphics manipulation package called ImageMagick has been upgraded to version 6.1.5-7. This package includes programs like "convert", "combine", "identify", "mogrify", "montage", "animate", "display", and "import". There are man pages for each of these programs. More information can be found at:

    http://www.imagemagick.org/

    This package is especially good for image type conversion.

    A perl interface to ImageMagick is also available. More details can be found at:

    http://www.imagemagick.org/www/perl.html



  23. Maple

    Maple, another mathematical package, has been upgraded to version 9.5. There is on-line help available, including a "New User's Tour", under the "Help" menu in the X Windows version of the program. It can be invoked as:

    > xmaple # X-windows version
    > maple # non-gui



  24. Matlab

    Matlab is a computing environment that provides tools for data analysis, visualization, and algorithm and application development. Matlab has been upgraded from Release 13 to Release 14. There is on-line help available by selecting "MATLAB Help" from the Help menu, or from loading this URL in your browser:

    file://usr/local/matlab/matlab-13/help/begin_here.html

    With this release, we also have installed Matlab on the Mac OS X machines, where it is a Macintosh application.




  25. PyDrizzle

    PyDrizzle and MultiDrizzle have been upgraded. These tools are PyRAF programs for drizzling dithered data, particularly from the ACS instrument on HST. For more information, see the web pages:

    http://stsdas.stsci.edu/pydrizzle/
    http://stsdas.stsci.edu/pydrizzle/multidrizzle/

    The latest changes are documented in:

    file://usr/local/iraf/extern/stsdas/python/pydrizzle/History
    file://usr/local/iraf/extern/stsdas/python/multidrizzle/README

    and include a number of improvements in the handling of WCS information.




  26. SpamAssassin

    SpamAssassin is a mail filter program that can help identify and mark e-mails that have contents resembling SPAM. It can be run on a per-user basis, or on a site-wide basis. When SpamAssassin identifies a spam, it changes the "Subject:" of the e-mail to contain the word "*****SPAM*****". It also adds certain headers mail programs can use to sort out the spam.

    For more information, see:

    http://www.spamassassin.org/

    Or see the documentation with this command:

    > perldoc spamassassin
    > perldoc Mail::SpamAssassin::Conf
    > man spamassassin



  27. SPOT

    The SIRTF Planning Observations Tool (SPOT) has been upgraded. This is a Java-based tool for preparing observations on the SIRTF observatory. This version is required for Cycle 2 proposals. The Leopard archive tool has also been upgraded.

    Note that the Mac OS X version of these tools is a native Mac application and as such can be found in:

    /usr/local/Applications/

    There is an on-line "Help" menu, and the User Guide is available locally:

    file://usr/local/optical/spot/Spot_UserGuide_v110.pdf
    file://usr/local/optical/spot/Leopard_UserGuide_v20.pdf

    Users will also want to visit the web site for the Spitzer Science Center:

    http://ssc.spitzer.caltech.edu/



  28. supermongo

    Supermongo, the plotting package, has been upgraded. This is a minor release, primarily for bug fixes. For more information, see

    http://www.astro.princeton.edu/~rhl/sm

    or use the info program to read the Supermongo documentation. There is also a paper manual in Robinson 52, and a PostScript copy of the manual at:

    file://usr/local/lib/sm/sm.ps


pls@astro.caltech.edu
Last modified: Mon Feb 28 23:37:31 PST 2005